geneious version 6.1.7 (Biomatters Ltd)
90
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Biomatters Ltd
geneious version 6.1.7
Geneious Version 6.1.7, supplied by Biomatters Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/geneious+version+6%2E1%2E7/geneious+software/10__1016_slash_j__gecco__2019__e00708-98-17-20
Average 90 stars, based on 1 article reviews
Geneious Version 6.1.7, supplied by Biomatters Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/geneious+version+6%2E1%2E7/geneious+software/10__1016_slash_j__gecco__2019__e00708-98-17-20
Average 90 stars, based on 1 article reviews
geneious version 6.1.7 - by Bioz Stars,
2026-09
90/100 stars
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Sequencing:Article Title: Investigation into potential transmission sources of Giardia duodenalis in a threatened marsupial (Petrogale penicillata). Article Snippet: Assemblages of the protozoan parasite Giardia duodenalis common in humans and domestic species are increasingly identified in wildlife species, raising concern about the spill-over of pathogens from humans and domestic animals into wildlife.. Here, the identity and prevalence of G. duodenalis in populations of a threatened marsupial, the brush-tailed rock-wallaby (Petrogale penicillata), was investigated.. Identification of G. duodenalis isolates, across three loci (18S rRNA, b-giardin and gdh), from rock-wallaby fecal samples (n = 318) identified an overall detection rate of 6.3%. Article Title: Phylogeny, systematics, and trait evolution of Carex section Glareosae. Article Snippet: Phylogenetic analysis— Raw sequences were assembled and edited using Article Title: Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods. Article Snippet: The quantification of the biological diversity in environmental samples using high-throughput DNA sequencing is hindered by the PCR bias caused by variable primer–template mismatches of the individual species.. In some dietary studies, there is the added problem that samples are enriched with predator DNA, so often a predator-specific blocking oligonucleotide is used to alleviate the problem.. However, specific blocking oligonucleotides could coblock nontarget species to some degree. Article Title: Pleistocene radiation of the serpentine-adapted genus Hesperolinon and other divergence times in Linaceae (Malpighiales). Article Snippet: Sequences were checked for basecalling errors using Article Title: Whole-loop mitochondrial DNA D-loop sequence variability in Egyptian Arabian equine matrilines Article Snippet: Sequencing products were purified using SEPHADEX ® G-50 medium grade (GE Healthcare Life Sciences, Pittsburgh, PA) before being analyzed using a 3730xl capillary sequencer (Applied Biosystems) and edited using Article Title: Candidate adaptive genes associated with lineage divergence: identifying SNPs via next-generation targeted resequencing in mule deer (Odocoileus hemionus). Article Snippet: Mule deer (Odocoileus hemionus) are an excellent non-model species for empirically testing hypotheses in landscape and population genomics due to their large population sizes (low genetic drift), relatively continuous distribution, diversity of occupied habitats, and phenotypic variation.. Because few genomic resources are currently available for this species, we used exon data from a cattle (Bos taurus) reference genome to direct targeted resequencing of 5,935 genes in mule deer.. We sequenced approximately 3.75 Mbp at minimum 20X coverage in each of the seven mule deer, identifying 23,204 single nucleotide polymorphisms (SNPs) within, or adjacent to, 6,886 exons in 3,559 genes. Article Title: Evaluating evolutionary history and adaptive differentiation to identify conservation units of Canada lynx (Lynx canadensis) Article Snippet: 254 Sequence data were aligned and manually checked for sequencing errors and SNPs with 255 the software Article Title: Description of genomic islands associated to the multidrug-resistant Pseudomonas aeruginosa clone ST277. Article Snippet: Description of genomic islands associated to the multidrug-resistant Pseudomonas aeruginosa clone ST277 Melise Chaves Silveira, Rodolpho Mattos Albano, Marise Dutra Asensi, Ana Paula D’Alincourt Carvalho-Assef PII: S1567-1348(16)30151-4 DOI: doi: 10.1016/j.meegid.2016.04.024 Reference: MEEGID 2722 To appear in: Received date: 14 October 2015 Revised date: 13 April 2016 Accepted date: 20 April 2016 Please cite this article as: Silveira, Melise Chaves, Albano, Rodolpho Mattos, Asensi, Marise Dutra, Carvalho-Assef, Ana Paula D’Alincourt, Description of genomic islands associated to the multidrug-resistant Pseudomonas aeruginosa clone ST277, (2016), doi: 10.1016/j.meegid.2016.04.024 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Software:Article Title: Investigation into potential transmission sources of Giardia duodenalis in a threatened marsupial (Petrogale penicillata). Article Snippet: Assemblages of the protozoan parasite Giardia duodenalis common in humans and domestic species are increasingly identified in wildlife species, raising concern about the spill-over of pathogens from humans and domestic animals into wildlife.. Here, the identity and prevalence of G. duodenalis in populations of a threatened marsupial, the brush-tailed rock-wallaby (Petrogale penicillata), was investigated.. Identification of G. duodenalis isolates, across three loci (18S rRNA, b-giardin and gdh), from rock-wallaby fecal samples (n = 318) identified an overall detection rate of 6.3%. Article Title: Phylogeny, systematics, and trait evolution of Carex section Glareosae. Article Snippet: Phylogenetic analysis— Raw sequences were assembled and edited using Article Title: Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods. Article Snippet: The quantification of the biological diversity in environmental samples using high-throughput DNA sequencing is hindered by the PCR bias caused by variable primer–template mismatches of the individual species.. In some dietary studies, there is the added problem that samples are enriched with predator DNA, so often a predator-specific blocking oligonucleotide is used to alleviate the problem.. However, specific blocking oligonucleotides could coblock nontarget species to some degree. Article Title: Pleistocene radiation of the serpentine-adapted genus Hesperolinon and other divergence times in Linaceae (Malpighiales). Article Snippet: Sequences were checked for basecalling errors using Article Title: Whole-loop mitochondrial DNA D-loop sequence variability in Egyptian Arabian equine matrilines Article Snippet: Sequencing products were purified using SEPHADEX ® G-50 medium grade (GE Healthcare Life Sciences, Pittsburgh, PA) before being analyzed using a 3730xl capillary sequencer (Applied Biosystems) and edited using Article Title: Candidate adaptive genes associated with lineage divergence: identifying SNPs via next-generation targeted resequencing in mule deer (Odocoileus hemionus). Article Snippet: Mule deer (Odocoileus hemionus) are an excellent non-model species for empirically testing hypotheses in landscape and population genomics due to their large population sizes (low genetic drift), relatively continuous distribution, diversity of occupied habitats, and phenotypic variation.. Because few genomic resources are currently available for this species, we used exon data from a cattle (Bos taurus) reference genome to direct targeted resequencing of 5,935 genes in mule deer.. We sequenced approximately 3.75 Mbp at minimum 20X coverage in each of the seven mule deer, identifying 23,204 single nucleotide polymorphisms (SNPs) within, or adjacent to, 6,886 exons in 3,559 genes. Article Title: Evaluating evolutionary history and adaptive differentiation to identify conservation units of Canada lynx (Lynx canadensis) Article Snippet: 254 Sequence data were aligned and manually checked for sequencing errors and SNPs with 255 the software Article Title: Description of genomic islands associated to the multidrug-resistant Pseudomonas aeruginosa clone ST277. Article Snippet: Description of genomic islands associated to the multidrug-resistant Pseudomonas aeruginosa clone ST277 Melise Chaves Silveira, Rodolpho Mattos Albano, Marise Dutra Asensi, Ana Paula D’Alincourt Carvalho-Assef PII: S1567-1348(16)30151-4 DOI: doi: 10.1016/j.meegid.2016.04.024 Reference: MEEGID 2722 To appear in: Received date: 14 October 2015 Revised date: 13 April 2016 Accepted date: 20 April 2016 Please cite this article as: Silveira, Melise Chaves, Albano, Rodolpho Mattos, Asensi, Marise Dutra, Carvalho-Assef, Ana Paula D’Alincourt, Description of genomic islands associated to the multidrug-resistant Pseudomonas aeruginosa clone ST277, (2016), doi: 10.1016/j.meegid.2016.04.024 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Purification:Article Title: Investigation into potential transmission sources of Giardia duodenalis in a threatened marsupial (Petrogale penicillata). Article Snippet: Assemblages of the protozoan parasite Giardia duodenalis common in humans and domestic species are increasingly identified in wildlife species, raising concern about the spill-over of pathogens from humans and domestic animals into wildlife.. Here, the identity and prevalence of G. duodenalis in populations of a threatened marsupial, the brush-tailed rock-wallaby (Petrogale penicillata), was investigated.. Identification of G. duodenalis isolates, across three loci (18S rRNA, b-giardin and gdh), from rock-wallaby fecal samples (n = 318) identified an overall detection rate of 6.3%. Article Title: Phylogeny, systematics, and trait evolution of Carex section Glareosae. Article Snippet: Phylogenetic analysis— Raw sequences were assembled and edited using Article Title: Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods. Article Snippet: The quantification of the biological diversity in environmental samples using high-throughput DNA sequencing is hindered by the PCR bias caused by variable primer–template mismatches of the individual species.. In some dietary studies, there is the added problem that samples are enriched with predator DNA, so often a predator-specific blocking oligonucleotide is used to alleviate the problem.. However, specific blocking oligonucleotides could coblock nontarget species to some degree. Article Title: Pleistocene radiation of the serpentine-adapted genus Hesperolinon and other divergence times in Linaceae (Malpighiales). Article Snippet: Sequences were checked for basecalling errors using Article Title: Whole-loop mitochondrial DNA D-loop sequence variability in Egyptian Arabian equine matrilines Article Snippet: Sequencing products were purified using SEPHADEX ® G-50 medium grade (GE Healthcare Life Sciences, Pittsburgh, PA) before being analyzed using a 3730xl capillary sequencer (Applied Biosystems) and edited using Article Title: Candidate adaptive genes associated with lineage divergence: identifying SNPs via next-generation targeted resequencing in mule deer (Odocoileus hemionus). Article Snippet: Mule deer (Odocoileus hemionus) are an excellent non-model species for empirically testing hypotheses in landscape and population genomics due to their large population sizes (low genetic drift), relatively continuous distribution, diversity of occupied habitats, and phenotypic variation.. Because few genomic resources are currently available for this species, we used exon data from a cattle (Bos taurus) reference genome to direct targeted resequencing of 5,935 genes in mule deer.. We sequenced approximately 3.75 Mbp at minimum 20X coverage in each of the seven mule deer, identifying 23,204 single nucleotide polymorphisms (SNPs) within, or adjacent to, 6,886 exons in 3,559 genes. Article Title: Evaluating evolutionary history and adaptive differentiation to identify conservation units of Canada lynx (Lynx canadensis) Article Snippet: 254 Sequence data were aligned and manually checked for sequencing errors and SNPs with 255 the software Article Title: Description of genomic islands associated to the multidrug-resistant Pseudomonas aeruginosa clone ST277. Article Snippet: Description of genomic islands associated to the multidrug-resistant Pseudomonas aeruginosa clone ST277 Melise Chaves Silveira, Rodolpho Mattos Albano, Marise Dutra Asensi, Ana Paula D’Alincourt Carvalho-Assef PII: S1567-1348(16)30151-4 DOI: doi: 10.1016/j.meegid.2016.04.024 Reference: MEEGID 2722 To appear in: Received date: 14 October 2015 Revised date: 13 April 2016 Accepted date: 20 April 2016 Please cite this article as: Silveira, Melise Chaves, Albano, Rodolpho Mattos, Asensi, Marise Dutra, Carvalho-Assef, Ana Paula D’Alincourt, Description of genomic islands associated to the multidrug-resistant Pseudomonas aeruginosa clone ST277, (2016), doi: 10.1016/j.meegid.2016.04.024 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. |